Contact experts in Bioinformatic Tools to get answers
1,044 views 2,220 posts
Questions related to Bioinformatic Tools
I have a list of proteins and I want to see what molecular pathways connect them. Are there any bioinformatic tools of such kind?
07 July 2019 2,806 3 View
Is their any online bioinformatic tool available through which I can understand or know the interacting partners of a kinase domain of the protein I am studying? I wish to study interactome of...
07 July 2019 6,076 6 View
I have seen several validation for the SNP entries in ensembl genome browser and other tools like PolyPhen2, Panther, SIFT, PredictSNP etc., are available. Which prediction will be much helpful to...
18 June 2019 6,423 1 View
how to study a certain type of mutations with another type of protein (not mutation and totally different from mutation) by (bioinformatics tools). What is your opinion and suggestion about this?
15 June 2019 4,612 1 View
Can anyone help me to find out about online server to analyzing Molecular Dynamic Simulations, because I am know only offline tools such GROMACS, Yassara, MOE, etc. Thanks.
06 June 2019 8,572 2 View
Hi. I am working on fungal endophyte. I am looking for 3 specific strains of endophyte and genes present in them. I have a differential expression datasets for all three strains with normalised...
06 June 2019 8,733 3 View
06 June 2019 4,326 2 View
I've recently started looking into the different visual analytics tools out there to help with the NGS project I'll be working on in the coming weeks, and was wondering if I could get some...
06 June 2019 9,929 2 View
I have a large list of protein accession numbers (which I could convert to another identification type) that were identified as binding partners of my protein of interest. I would like to draw out...
06 June 2019 7,391 6 View
06 June 2019 1,495 5 View
If there is any online software that can reduce the number of contigs or forming longer sequence in whole genome sequencing for mycobacteria species? Thank you very much!
06 June 2019 300 1 View
04 June 2019 2,836 2 View
I have a list of genes that have been proven to be up-regulated in a human disease condition of interest. I also have a protein which according to literature is said to be a DNA binding protein. I...
26 May 2019 1,855 2 View
Dear All, I would like to use CHARMM-GUI nanodisc functionality to embed a membrane protein with a non-standard residue; and I need to provide a CHARMM format topology and parameter files for the...
21 May 2019 5,606 3 View
Hi all, I'm trying to use PWMs for a transcription factor of interest to identify conserved binding sites in upstream promoters (up to 5 kb from TSS), across several vertebrate species. My model...
05 May 2019 2,743 1 View
05 May 2019 3,151 2 View
I would like to understand using bioinformatic tools if a peptide interacts with a protein, how can I do it?
05 May 2019 8,541 4 View
I would lilke to predict possible interactions between costimulatory molecules expressed by dendritic cells with naive T-cells using bioinformatic tools, but I don't know that whether it is...
05 May 2019 1,859 1 View
Hello everyone! I have a question on heatmaps with a cladogram (like the one shown in the picture, taken from...
05 May 2019 3,458 2 View
I have annotated several genome sequences with their proteins, this is available as either a .faa Protein FASTA file of the translated CDS sequences or a .tsv of the protein annotations (outputted...
05 May 2019 5,525 2 View
I want to check whether any response element is present for a particular set of transcription factors on my gene of interest. I have already found EPD (http://epd.epfl.ch/) for promoter sequence...
05 May 2019 1,191 7 View
I want to analyze ligand-protein interaction (3D) with bioinformatics tools, please give recommendation about reliable software or web service. Thanks.
05 May 2019 1,034 5 View
I am looking to validate the information generated from metagenomic sequencing. I know that I can carry out qPCR to validate my data. And I guess Random forest regression analysis can be done too....
23 April 2019 4,574 1 View
Hello everyone, we are characterizing some proteins in the context of vaccine development and we are interested in determining there are any epitopes that may rather lead to immune evasion. Don't...
04 April 2019 3,022 3 View