Contact experts in Bioinformatic Tools to get answers
1,234 views 2,430 posts
Questions related to Bioinformatic Tools
I want to access the sequence promoter of tumor suppressor genes and long non-coding RNA in the breast cancer cell line?
10 October 2019 422 6 View
I am planning to do lab experiments with climatic chambers and also field experiments in woodlands. I would like to use data logger for both types of experiments to check on temperature and...
23 September 2019 1,445 13 View
Hello, I'm a biologist interested in machine learning application in genomic data; specifically, I'm trying to apply clustering techniques to differential gene expression data. I started by...
09 September 2019 2,907 9 View
Help appreciated!! We are having Empirical data sets of plant barcodes (matK, ITS and rbcL), and want to compare analytical methodology used for Empirical data sets with the Synthetic data...
09 September 2019 951 8 View
Dear Researchers, I am trying to find the missing enzymes in carbohydrate metabolism pathway. Since I have enzymes in starting and ending of biosynthesis pathway but only one enzyme is not shown...
09 September 2019 3,727 4 View
Hello! This is my first foray into immunoprecipitation. I'm IPing HER2 after a treatment with a chemical. I know from previous westerns(total protein) of the same treatment that the HER2 receptor...
31 August 2019 2,149 5 View
I used Swiss ADME few days back . Now I have to do analysis but it is not working.
19 August 2019 4,865 1 View
I have transcriptomic and proteomics data from prokaryotes. What is the best way to integrate this data? Is there any bioinformatic tool for this data integration?
08 August 2019 2,707 3 View
I have a list of proteins and I want to see what molecular pathways connect them. Are there any bioinformatic tools of such kind?
07 July 2019 2,822 3 View
Is their any online bioinformatic tool available through which I can understand or know the interacting partners of a kinase domain of the protein I am studying? I wish to study interactome of...
07 July 2019 6,091 6 View
I have the sequence of the protein that I want to model and I have two proteins with 3D structures that can be downloaded from PDB.org. The two likely template proteins being considered were...
30 June 2019 9,545 3 View
I have seen several validation for the SNP entries in ensembl genome browser and other tools like PolyPhen2, Panther, SIFT, PredictSNP etc., are available. Which prediction will be much helpful to...
18 June 2019 6,441 1 View
how to study a certain type of mutations with another type of protein (not mutation and totally different from mutation) by (bioinformatics tools). What is your opinion and suggestion about this?
15 June 2019 4,620 1 View
Can anyone help me to find out about online server to analyzing Molecular Dynamic Simulations, because I am know only offline tools such GROMACS, Yassara, MOE, etc. Thanks.
06 June 2019 8,592 2 View
Hi. I am working on fungal endophyte. I am looking for 3 specific strains of endophyte and genes present in them. I have a differential expression datasets for all three strains with normalised...
06 June 2019 8,744 3 View
06 June 2019 4,346 2 View
I've recently started looking into the different visual analytics tools out there to help with the NGS project I'll be working on in the coming weeks, and was wondering if I could get some...
06 June 2019 9,942 2 View
I have a large list of protein accession numbers (which I could convert to another identification type) that were identified as binding partners of my protein of interest. I would like to draw out...
06 June 2019 7,401 6 View
06 June 2019 1,513 5 View
If there is any online software that can reduce the number of contigs or forming longer sequence in whole genome sequencing for mycobacteria species? Thank you very much!
06 June 2019 313 1 View
04 June 2019 2,848 2 View
I have a list of genes that have been proven to be up-regulated in a human disease condition of interest. I also have a protein which according to literature is said to be a DNA binding protein. I...
26 May 2019 1,869 2 View
Dear All, I would like to use CHARMM-GUI nanodisc functionality to embed a membrane protein with a non-standard residue; and I need to provide a CHARMM format topology and parameter files for the...
21 May 2019 5,614 3 View
Hey ! I found this really interesting article ( Monodispersed microfluidic droplet generation by shear focus... ) that explains the utility of a expansion design following the nozzle to create a...
20 May 2019 5,162 1 View