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Questions related to Bioinformatic Tools
Hi, I have a list of SNPs and I wan t to find the SNPs which are in the same LD blocks with them. Does anyone know a software or an online tool for that? Thanks
09 July 2018 6,455 2 View
Hi I mixed Tris HCl, EDTA, NaCl and deoxycholate 0.5% to make up a 1x RIPA buffer stock. After overnight in fridge, I found that my buffer becomes gel-like! It literally form a 'jelly' in my...
09 July 2018 158 4 View
I have a gene, let's say p300, and I have a list of genes that are co-expressed with it. I want to find which of these genes have the most similar function to p300. What would be the best tool for...
07 July 2018 1,305 5 View
Hello everyone, I am working on some SNPs and mutations and I would like to have good prediction tools. It is easy to find bioinformatic tools for SNPs prediction but I couldn't find prediction...
07 July 2018 3,328 0 View
Hi, Does anyone know any bioinformatics tool or software to predict the potential ligand of a protein?
07 July 2018 8,151 2 View
Is there any bioinformatic tool to predict target of novel miRNAs as currently available tools predict only known miRNAs.
07 July 2018 1,295 1 View
My transcripts come from an annotated transcriptome of a non-model plant. I would like to look for population variation in the sequence for transcription factors related to drought tolerance. I...
07 July 2018 8,476 5 View
07 July 2018 7,517 3 View
I have sequenced an intronic fragment. I want to find mutations or polymorphisms in the fragment.
07 July 2018 5,087 5 View
I am interested in identifying molecules, genes, epigenetic marks or cells from the microenvironment that are responsible for a dormant phenotype in cancer. What bioinformatic tools and approaches...
12 June 2018 3,941 3 View
Hello, I want to calculate RMSD values for the docking in R programme, so I want to get the cordinates from the MOE and load to R. How can I get the data from MOE? Thanks in advance
06 June 2018 1,370 4 View
I have a gene list and want to map it to human diseases to know what are the most probable disease relates to my list. What is the best bioinformatics tool to do this job?
06 June 2018 3,664 1 View
Hi, I have this protein whose sequence is 300 aa long. I am looking for any other proteins whose sequence is identical to my protein by at least 4 amino acid sequences. Are there any...
06 June 2018 6,303 2 View
06 June 2018 8,255 4 View
I want to study the effect of amino acid substitution in a flowering related protien gene in soybean, please suggest me available bioinformatics tools?
22 May 2018 5,783 3 View
Dear all, I'm currently working on a ChIP-Seq for a transcription factor and was preparing libraries using the qiagen QIAseq Ultralow Input Library Kit, checking the ligation of adapters with the...
22 May 2018 4,451 1 View
Hii... I have amino acid sequence of a protein from Arabidopsis annoted as CCCH Zinc Finger protein. How can confirm whether it is a trancription factor or not? Any experiment please tell me
09 May 2018 2,767 3 View
If i have genomes of both host and pathogen, can i do an in silico ananlysis to know the interacting genes? if yes, then what are the different approaches for carrying out such an analysis?
05 May 2018 8,185 1 View
05 May 2018 6,376 5 View
Is there any methods/ softwares to find selection signatures from the SNPs identified using ddRAD sequencing of single population?
05 May 2018 2,638 4 View
Bioinformatic tool for genome variation comparision.
05 May 2018 1,050 1 View
Hello, please, is there any user-friendly tool like ProtParam which enables multiple queries (multiple gene symbols/other identifiers or fasta sequences)? ProtParam is super tool, but...
05 May 2018 7,202 7 View
Hello everyone, I would like to calculate conservation score of amino acids from a multiple sequence alignment. Then by, I would like to get a simple 2 column table with residue id and...
05 May 2018 7,232 2 View
I am trying to submit sequences of COX-1 gene(mitochondrial gene) to gene bank. My sequences is almost 100% identical to a published one. It return a message saying that they contain stop codons...
05 May 2018 1,069 6 View