Contact experts in Bioinformatic Tools to get answers
1,231 views 2,430 posts
Questions related to Bioinformatic Tools
Using pymol to visualize cyclic peptide. The cartoon representation of cyclic peptide is missing at the head to tail linkage which when represented with line and stick representation is...
05 August 2021 3,618 2 View
I need to know in what situation, those alignment types should be used? And why? If you know any related article or reference please let me know.
26 July 2021 2,703 3 View
to detect particular mutation and the effect of drug on T or B lymphocyte population
21 July 2021 331 2 View
Hello guys! I did some ab-initio modelling using Rosetta's de novo prediction protocol (...
01 July 2021 8,208 0 View
Hi What is the best R package for QTL MAPPING in a large population?
28 June 2021 6,442 4 View
We just recently assembled a genome of a plant and would want to use Circos to draw the circular map comparing it with another genome. The genome has been annotated using MAKER-P. The final...
26 June 2021 3,421 3 View
Hello I want to make input files for Amber package to run molecular dynamics simulation. I don`t know how can i find references for choosing Histidine protonation state and N- and C- terminal...
30 May 2021 9,375 2 View
I have obtained a publicly available GWAS summary data which contain column such as chromosome: position (for SNPs), effect allele, reference allele, beta, se, P-value. I need the rs ID of all the...
23 April 2021 952 6 View
I am using PyRx0.8 in automated molecular docking and I encountered an error shown in the pictures attached below. The protein receptor won't set as an Autodock macromolecule because there are...
10 April 2021 1,476 0 View
The sample is highly degraded and the stereo microscopic images indicated a honeycomb appearance with minute spines in the coenostrum. The calice widths are about 1-2 mm. I'm having doubts with...
08 March 2021 7,526 4 View
I'm optimising a protocol for coral mucus sampling and DNA extraction for 16S rRNA gene sequencing. There are many different methods described in papers, mainly by syringes or swabs and different...
04 March 2021 2,084 5 View
Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...
03 March 2021 4,990 4 View
During a computational analysis, I found that for a protein of a plant, two different subcellular localizations are seen using CELLO and WoLF PSORT. For example, in CELLO, it identified the...
02 March 2021 6,968 2 View
I have used the i-Tasser several times, however it has been unavailable for several days. I tried the swiss-model, but the output was not very pleasant due to the model used. Is there any other...
01 March 2021 4,812 3 View
Hello, Could you please guide me with a standard protocol to do a hemolysis test for biomacromolecules? thanks in advance!
24 February 2021 5,491 1 View
I want to understand the basics of docking, and also know about all bioinformatics tools which are free of coast and helpfull in in-silico analysis?
23 February 2021 9,055 2 View
Dear everyone, When I using the rda function in r, I met this question. As you can see in the figure, there are a lot of deep blue points which refers to the species. But I would like remain...
16 February 2021 9,260 2 View
There is some confusion as to where factor 8 is stored, older text books say that they are stored in alpha granules but none of the recent literature mention this. I alsohave read that they are...
16 February 2021 1,542 1 View
I know there are bioinformatic tools that allow epitope prediction to determine if a certain peptide would trigger an immune response. I also read that for allergen diagnoses IgE of sensitised...
10 February 2021 4,331 3 View
Respective Faculty/Researchers I want to perform antimicrobial activity means in that I want to go for the first antibacterial activity and then proceed for MIC. I thought this procedure given in...
10 February 2021 5,889 2 View
Hello everyone, How are you guys doing? I'm currently working with antimicrobial peptide (AMP) project and one of our objectives is to predict the interaction of peptide against bacterial cell...
02 February 2021 1,480 3 View
I am trying to measure telomere length in an ant species using the TRF method, which is a Southern blot technique. Currently, I am struggling with analyzing the images and would appreciate any...
30 January 2021 788 3 View
Except PASS, by using PASS, we can predict biological activities.. Any other tools?
13 January 2021 7,306 1 View
Hi everyone, I am using the pyTMs plug in on Pymol to phosphorylate a particular threonine in my protein. I am having difficulty in selecting only one or two residues - it seems I can only...
06 January 2021 533 3 View