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Questions related to Bioinformatic Tools
Hello, Could you please guide me with a standard protocol to do a hemolysis test for biomacromolecules? thanks in advance!
24 February 2021 5,640 1 View
I want to understand the basics of docking, and also know about all bioinformatics tools which are free of coast and helpfull in in-silico analysis?
23 February 2021 9,305 2 View
Dear everyone, When I using the rda function in r, I met this question. As you can see in the figure, there are a lot of deep blue points which refers to the species. But I would like remain...
16 February 2021 9,606 2 View
There is some confusion as to where factor 8 is stored, older text books say that they are stored in alpha granules but none of the recent literature mention this. I alsohave read that they are...
16 February 2021 1,733 1 View
I know there are bioinformatic tools that allow epitope prediction to determine if a certain peptide would trigger an immune response. I also read that for allergen diagnoses IgE of sensitised...
10 February 2021 4,511 3 View
Respective Faculty/Researchers I want to perform antimicrobial activity means in that I want to go for the first antibacterial activity and then proceed for MIC. I thought this procedure given in...
10 February 2021 6,057 2 View
Hello everyone, How are you guys doing? I'm currently working with antimicrobial peptide (AMP) project and one of our objectives is to predict the interaction of peptide against bacterial cell...
02 February 2021 1,793 3 View
I am trying to measure telomere length in an ant species using the TRF method, which is a Southern blot technique. Currently, I am struggling with analyzing the images and would appreciate any...
30 January 2021 1,003 3 View
Except PASS, by using PASS, we can predict biological activities.. Any other tools?
13 January 2021 7,458 1 View
We are trying to design an experiment investigating chromatin co-localization of two DNA binding proteins in the system where both endogenous genes are knock-out and re-expressed with attached...
11 January 2021 3,954 2 View
Hi everyone, I am using the pyTMs plug in on Pymol to phosphorylate a particular threonine in my protein. I am having difficulty in selecting only one or two residues - it seems I can only...
06 January 2021 887 3 View
I am checking the synergies between two antifungals and a standard protocol is given by CLSI M26-A document, but i cannot access it. Anyone with a solution or other references kindly share with...
31 December 2020 6,169 1 View
I would like to have access to the pdf "Clinical and Laboratory Standards Institute. 2018. Methods for Dilution Antimicrobial Susceptibility Tests for Bacteria That Grow Aerobically, 11th...
21 December 2020 2,568 4 View
Dear All, I have the data of metabolic pathways in case and control, well there are pathways which are represented several times due to the involvement of reactions in case, well now I would...
10 December 2020 4,882 5 View
I have constructed some polymer structures using Material Studio. But I need LAMMPS input files for the simulation constructed from the Material Studio. Does anyone know how to get lammps input...
09 December 2020 549 1 View
#autodock #virtualscreening Question1: Am I doing this right , means do setting up conda on server works for virtual screening (AUTODOCK)? Question2: How can I modify the script (submit4.py)...
07 December 2020 2,966 3 View
I am interested in the different tools that can be used to create custom databases for targeted sequencing and how to trim the databases based on the amplicon size? Also, should custom databases...
03 December 2020 3,560 3 View
I am searching for new antimicrobial peptides and I don't have many skills in bioinformatics, so I want to know how to use these software packages to identify candidate coding regions within...
02 December 2020 8,707 4 View
I performed an IP protein experiment where I pulled down the protein of interest and attached it to a protein A sepharose 4B bead. I am planning to send this for mass spec at our core facility....
19 November 2020 859 1 View
Dear All We have revealed good results of certain fungal against cercaria of schistsoma. No we are seeking a good online tool, or any other methods to predict the extent of interaction between...
13 November 2020 10,059 1 View
I'm trying to build local gene synteny to identify homologs between different species. To do that, I've been accessing each individual gene of interest, going into gene view in NCBI and...
05 November 2020 9,394 2 View
I got P6282 from sigma. Working concentration given by them is .1mg/ml. Can i use it for neuronal differentiation of WJ-MSCs. Somebody please do help me or should i go for mol weight more than...
02 November 2020 3,507 4 View
Hello, I need to draw figure exactly like the ones below? Is there software that can do that for me? Even if not the same design, just the same idea. I can edit their design by myself. Reference:...
27 October 2020 1,707 3 View
I have a set of about 1000 homologous protein sequences with high diversity across various genera and families. What I need is to perform BLAST alignment of each possible sequence pair and obtain...
26 October 2020 1,594 5 View