Contact experts in Bioinformatic Tools to get answers
1,050 views 2,220 posts
Questions related to Bioinformatic Tools
I'm relatively new to bioinformatics tools and need to look at biosynthetic gene clusters, someone suggested using antiSMASH but I have no experience of this software. Can anyone suggest any tips...
02 February 2020 6,802 2 View
Dear all, I am analyzing WGS sequences of Enterobacteriaceae. However, I do not have any experience in software based on OSX or Linux. Could you recommend me user-friendly software (better free)...
01 January 2020 9,715 2 View
I am looking for a tool that can help in identifying binding region in the nucleotide sequence of a gene for transcription factors or help us to identify the transcription factors that can/may...
01 January 2020 2,396 3 View
Hello, I have a list of genomic coordinates from differentially methylation regions and a I need to extract from them a list of genes, and I don't want do look one region by one. Is there a R...
01 January 2020 3,323 4 View
Which book should I read to understand bioinformatics from the very beginning?
23 December 2019 7,279 24 View
hi, i am seeking for a tool or method for making protein prediction for a rare sequence, the protein has 256 residues and doesn't have any template which aligns, also there are 34 Gly, 10 Pro...
12 December 2019 8,048 5 View
Do you know any database for searching about endemic species, their genomes, differences, DNA barcodes etc.?
28 November 2019 269 3 View
Wolbachia is an endosymbiont bacteria in some filarial nematodes. It codes for some specific enzymes which regulate specific metabolic pathways. Here what I want to know is how to detect nuwts to...
11 November 2019 760 1 View
I wanted to detect the terpene synthase gene (TPS) in Eleusine coracana (Finger millet) plant, whose genome size is 1195.99 Mb, by the bioinformatics tool as it is not reported yet. The problem...
11 November 2019 3,322 1 View
I have a unknown transcript and want to find out its CDS region translated into protein. Kindly help me which bioinformatics tools will be helpful in finding this information.
11 November 2019 9,572 4 View
04 November 2019 1,769 3 View
Hello, I am trying to find a bioinformatic tool to use on multiple sequences and get a devision into categories , until now I have used T-COFFEE score to devide to catagories., for example, a...
29 October 2019 6,025 3 View
I am doing ATAC-seq with a new kit form Nextera which does not include Tn5. I bought separately Tn5, but it still does not work. I also used EPM from the new kit with indexes from Illumina, and...
15 October 2019 9,436 0 View
Dear Experts, I was trying to use REVIGO ( http://revigo.irb.hr/ ) for GO visualization. But I have more than one GO terms associated with a specific gene, which is expected and possible. REVIGO...
10 October 2019 993 1 View
I used VEGA, DANISH as well as PASS prediction to check ADMET properties. but any better suggestion?????
10 October 2019 7,873 4 View
10 October 2019 5,683 3 View
I want to access the sequence promoter of tumor suppressor genes and long non-coding RNA in the breast cancer cell line?
10 October 2019 410 6 View
I am planning to do lab experiments with climatic chambers and also field experiments in woodlands. I would like to use data logger for both types of experiments to check on temperature and...
23 September 2019 1,431 13 View
Hello, I'm a biologist interested in machine learning application in genomic data; specifically, I'm trying to apply clustering techniques to differential gene expression data. I started by...
09 September 2019 2,887 9 View
Help appreciated!! We are having Empirical data sets of plant barcodes (matK, ITS and rbcL), and want to compare analytical methodology used for Empirical data sets with the Synthetic data...
09 September 2019 925 8 View
Dear Researchers, I am trying to find the missing enzymes in carbohydrate metabolism pathway. Since I have enzymes in starting and ending of biosynthesis pathway but only one enzyme is not shown...
09 September 2019 3,709 4 View
Hello! This is my first foray into immunoprecipitation. I'm IPing HER2 after a treatment with a chemical. I know from previous westerns(total protein) of the same treatment that the HER2 receptor...
31 August 2019 2,134 5 View
I used Swiss ADME few days back . Now I have to do analysis but it is not working.
19 August 2019 4,855 1 View
I have transcriptomic and proteomics data from prokaryotes. What is the best way to integrate this data? Is there any bioinformatic tool for this data integration?
08 August 2019 2,690 3 View