Hi there,
I want to analyze deferentially gene expression of mice before and after treatment.
I have 6 mice and "paired-end" sequences, so how I could merge all my "before treatment" data to compare them with all "after treatment" data via DESeq2 ?!
Should I map/count/DESeq2 them separately?
Is there any way to combine (normalize) all replicates at first and then perform analysis like what we do generally in statistics?!
Thank you in advanced.