Hi there,

I want to analyze deferentially gene expression of mice before and after treatment.

I have 6 mice and "paired-end" sequences, so how I could merge all my "before treatment" data to compare them with all "after treatment" data via DESeq2 ?!

Should I map/count/DESeq2 them separately?

Is there any way to combine (normalize) all replicates at first and then perform analysis like what we do generally in statistics?!

Thank you in advanced.

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