My question in concerned with miRNAs in-situe detection. I have 3 separate  cell line, and want to prove the idea that certain miRNAs are expressed upon influenza in one cell type but not in the other. I thought to use certain labelling for miRNA with labelling for the cell itseld in a douple labelling experiment. Also, ISH is difficult for miRNAs. Is there is any other option ? 

Thanks

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