limma and DEseq

Some Packages (to install from Bioconductor):

• DESeq2
• clusterProfiler
• DOSE
• org.Hs.eg.db
• pathview
• DEGreport

Thank you ! :)

Yes, Dan Powell , very new to R and still figuring it out, thank you for your response.

Hi,

Do you have microarray expression data?

You can use Bioconductor, https://www.bioconductor.org/install/ which is a bioinformatic suit with lot of in-built packages within it.

install by: source("https://bioconductor.org/biocLite.R")

packages can be found here : https://www.bioconductor.org/packages/release/bioc/

You can search different packages, based on your data and read the description and usage by reading the vignette