Can you a suggest a good tool for visualizing a de novo assembly of a large mammalian genome?

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Can the amplicon size be shorter than the sequencing read length in 16s rRNA sequencing?

I have found a dataset where the 16rRNA amplicon size is 292 bp while the sequencing reads are 300 bp. Is it possible or is it a mistake by the people who uploaded the data in NCBI?

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Can you a good tool for calculating N50 statistic of a large mammalian genome?

Suppose you do de novo assembly of a mammalian genome. How do you calculate the N50 value? I have tried quast but its fails probably because of the huge size of the genome.

21 April 2022 5,057 5 View

How do I get alpha diversity and beta diversity from shotgun metagenomic data?

Please suggest a tool that can provide alpha diversity and beta diversity of microbes from shotgun metagenomic data either from raw sequences or assembled contigs.

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How can I prepare a bilayer with a receptor-ligand complex in CHARMM-GUI for doing simulation in GROMACS?

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Which tools can I use to check the quality of metagenomically assembled genomes? And how do I refine and validate them?

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12 July 2021 8,467 4 View

What are the Current research topics in the area of Software Development particularly for industry level application development?

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How to solve the GROMACS error "One or more water molecules can not be settled" during energy minimization?

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How to decode frames using HEVC decoder, when there is an error in the encoded stream?

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Who of all the Global Scientific community will help me Prof. Dr. Yoshida make way for TPEOM, MEC ~EMC to return the atmospheric gases to the norma ?

TEP presentation caption (The Environmental Project) Re: Why should Washington’s DC, or any country government point of location think of as nowadays of as to being 'tomorrow as to come! if it...

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How is the bacterial genome's high protein count verified as genuine despite 800+ contigs and good metrics (98.55%completeness, 0.68% contamination)?

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Recovery Viurses from bacteria genome?

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Why my negative control siRNA is decreasing the target gene's expression?

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How to use NCBI datasets ?

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Enquire about the calculation of percentage of reads mapped to the reference sequence?

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Promotor observation in region annotation of RNA RIP-seq?

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Where can I get PCR Primers for COI barcoding of birds?

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Is there any way to calculate whole genome similarity of organism without the whole genome sequencing ?

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