Hello everyone,
I am currently looking for tools to recovery viral genomes from bacterial genomes, not metagenomes. However, I have only found tools that are designed for retrieving and studying viral genomes from metagenomes, not from genomes.
And here are the tools.
VIBRANT
VirSorter
VirFinder
geNomad
VirusSeeker
Prophage Hunter ; A tool for prophage sequence prediction.
PHASTER (PHAge Search Tool Enhanced Release): An online tool for identifying pro-phage sequences in bacterial genomes.
PHAST, ACLAME, or PHASTER ; comparative genomics and functional analysis
Could you help me find suitable tools for recovery viral genomes from bacterial genomes?
My project focuses on exploring viral genomes in the first phase.
Recovering viruses from bacterial genomes involves extracting bacterial DNA, detecting and isolating viral sequences, and characterizing the virus. The exact methods and techniques may vary depending on the type of virus and the specifics of the bacterial system
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