Previously, I tried the following link but it doesn't provide search options against PDB database like that of NCBI;
https://web.archive.org/web/20120628204442/http://toolkit.tuebingen.mpg.de/cs_blast
hello dr
follow
Hi,
https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins
you can have a look at :
1. For protein
2. For nucleotide
https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&BLAST_SPEC=&LINK_LOC=blasttab&LAST_PAGE=blastp&LAST_PAGE=blastp
3. For translated nucleotide
https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastx&PAGE_TYPE=BlastSearch&BLAST_SPEC=&LINK_LOC=blasttab
4. To search translated nucleotide database using a protein query
https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=tblastn&PAGE_TYPE=BlastSearch&BLAST_SPEC=&LINK_LOC=blasttab
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