I have scRNA sequencing data and I want to perform differential gene expression in macrophages. However, I want to include bioinformatics that could complement my studies. Is there any tool that I can include?
https://www.biomage.net/blog/best-single-cell-rna-sequencing-data-analysis-tools-in-2022
Hi Shali Ali,
After performing all analyses regarding scRNA-seq, you can use other studies from a peer-reviewed journal and relate them to your subject to validate what you find, such as differences between treatments, the relationship between genes (co-expression) or enrichment to a specific pathway. To combine all these data, you can use any programming language or look for integrative tools.
There are several tools that you can use to perform differential gene expression analysis on your scRNA-seq data. Some popular options include:
https://support.10xgenomics.com/single-cell-gene-expression/software/visualization/latest/what-is-loupe-cell-browser
- Badges
- Science method
- Similar topics
- Mathematics
- Statistics
- Statistical Techniques
- Meta-Analysis