I am looking for software to help analyze SELEX NGS data, including alignment, sequence enrichment, and other related tasks. Can anyone recommend suitable tools or software?
For analyzing SELEX (Systematic Evolution of Ligands by Exponential Enrichment) next-generation sequencing (NGS) data, here are some software tools and packages that can be helpful: 1. SATuRN (Sequence Analysis Toolkit for Rapid NGS) 2. FASTAptamer
Selex is the technology and not particularly the data format. All the technology specific data generate fastq data as a result, which can be used in a general seq data analysis pipeline, with some modification if necessary.
Hello, I know that some people use AptaSUITE. However, I can't comment on it's suitability as I have not used it. I would love to hear from someone who used it.
Link: https://drivenbyentropy.github.io/
Link to the article: Article AptaSUITE: A Full-Featured Bioinformatics Framework for the ...