I am searching for miRNA database that contains the nucleotide sequences of cancers in the human genome. I have found a database that characterizes the samples by the number of reads_per_millio while i am interested in the changes done in the sequence itself. Thanks.
Touati Benoukraf
Yes, TACCO is a good one: https://www.nature.com/articles/s41598-019-40629-z
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Mahmoud Ahmed
The TCGA most likely has sequencing data on miRNA. Unfortunately, not all the raw data is available easily, but you can as for access to some of these data through (https://gdc.cancer.gov/access-data/obtaining-access-controlled-data).
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Masoumeh Fardi
This may be a good database for you...
http://mirtarbase.mbc.nctu.edu.tw/php/index.php
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- Biological Science
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- Nucleic Acids
- RNA
- Small RNA
- microRNA
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