I'm working with iPS cells, and I know that some researchers here have been facing the same problem as I am: black dots appearing on the adherence matrix (Geltrex, in my case). Every time I do a long passage, like 1:20, I start to notice some black dots on the Geltrex membrane. It’s not bacteria, fungus, or anything biological—I’ve tested with antibiotics and antimycotics, but the dots are still there. I’m not sure if the cells are releasing debris or something similar. I researched this issue, and it seems to be a common occurrence in this type of culture. The recommendation is to avoid long passages or not leave the well with too few cells.

However, I’m not entirely sure about this. I lost my last differentiation, and the cells had a lot of these black dots (unfortunately, I don’t have any images). I’m blaming these dots for the failure. I’ve started another differentiation today, and this time I seeded more cells per well. Oh, and just to clarify: the iPS cells seemed fine even with these black dots everywhere.

Has anyone else experienced this?

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