I am trying to set up an in vitro experiment where I co-culture peritoneal macrophages and T cells together in the presence of HMPV infection. After incubating the macrophages and T cells together, I harvest the cells and run flow cytometry looking for T cell activation via Ki67 and CD44 markers.
I have repeated this experiment three times, adjusting the conditions between the three replicates and each time I see that the uninfected macrophages and T cells are more activated than the infected groups (i.e expressing more KI67 and CD44).
I tried removing mCSF from the media after setting up the co-culture since I thought this might be activating the macrophages. I also tried various lengths of times for the co-culture ranging from 48hrs-4 days. I added IL-2 to the media to help promote T cell survival. In addition, I use a 96 well u-bottom plate and added the macrophages: T cells in a 1:10 ratio to ensure adequate T cell activation.
Please let me know if you have any suggestions for what I should try next. Thank you!