I am going to evaluate the preventive effect of probiotic in C.rodentium induced colitis. Especially I want to test its ability in restoring the imbalance of Th17/Treg. First, I will use flow cytometry to obtain the Th17/Treg ratio from isolated LPMC. But I am confused about how to choose the exact method to detect the Th17/Treg related cytokine. Do I use ELISA , RT-qPCR or both?
If I use ELISA how do I choose the sample from peripheral Blood, cell supernatant or tissue homogenate?
Is it necessary to analysis the Th1 and Th2 related cytokine? I 'm a rookie in IBD research so I hope to obtain your experienced guidance.