I want to do some in vivo study using zebrafish but I don't know which tag is better to use it for WB or IP and which one does not cause a background? Myc, Flag or HA?..Thanks in advance.
I have some experience with immunofluorescence, HA and V5 work well, while flag causes non-specific nuclear staining. For Western blot and IP, however, I believe all of these epitopes should work well.
Myc tag (from 3 to 6) works very well in zebrafish embryo (see our paper, Rampon et al, 2015, Development). Can work with monoclonal (9E10) and polyclonal (brighter signal).