What is the difference between genbank , bankit and clinvar database?

More Lina Naji's questions See All

How can the modification of garden soil cause global warming?

Hello, I am working on a soil project and I found a primary research article that tests how the modification of agricultural soil can cause global warming, using a thermal collector, however I...

02 March 2021 7,161 3 View

How to use the bioluminescent ATP assay kit?

I need to do a mitochondrial ATP quantification assay in insects and for this, I have a bioluminescent ATP assay kit but I don't have a protocol yet. I'd like to know if you have some kind of...

24 January 2021 3,655 3 View

How to make a map of a study area?

My question is about preparing a simple map of a study area. Would you recommend a website or software which has easy to use features? To be more specific, e.g. a map which would consist of the...

10 January 2021 5,158 5 View

How to find solar heat flux to assign in fluent boundary?

Hi all researcher, I needs help to determine solar heat flux if I have a value of solar radiation (w/m2) and solar absorptivity coefficient (alpha). Does it it have any formula? I want to assign...

22 October 2020 1,977 5 View

Could anyone recommend a scale for measuring Dweck's Growth Mindset?

I intend to conduct a study based on Dweck's theory of mindsets (implicit personality theories, or self-theories). I am looking for a survey for measuring a mindset for employees in organizations.

10 August 2020 4,200 6 View

How much heat transfer coefficient of air?

I am looking of value heat transfer coefficient to assign in Ansys steady state thermal simulation. But I'm not clear about heat transfer coefficient is for material or air? Because in...

20 January 2020 7,342 5 View

Would you please correct the wrong name citation?

Dears; I have the article that is entitled by "Potato harvester performance on tubers damage at the eastern of Saudi Arabia" with many citations, but you are showing my article as having just 2...

09 December 2019 4,555 3 View

Simulation of bimaterial section with XFEM using ABAQUS?

Hi dear colleagues, How to use XFEM in ABAQUS to model a composite section? Thanks

30 April 2019 8,235 3 View

Western Blott results?

To publish a result of western blott it is necessary to show the bands of the total protein? In the case of not showing this part of the result, can it still be published?

20 March 2019 5,596 2 View

What topic should i focus on my MSc accounting and finance dissertation proposal?

Hi.. I have some topics I'd like to focus on but still debating which to focus on and whether they have a lot of background to evaluate. The following topics: -Accounting ethics and sustainability...

12 December 2018 4,127 3 View

Once I annotate a genome with PROKKA, where do I uplaod it?

I have annotated a genome successfully with PROKKA. I can upload the genome to NCBI, but I cannot upload the annotation. PROKKA does not produce files in the correct format, and I cannot find any...

29 December 2020 3,976 3 View

How can I get Genbank accession code given the scientific names?

Hello! I now have a complete list of about 23k plant species that I want to check if Genbank has the sequencing data for a phylogenetic analysis later, and I am really new to the topic. Is...

02 November 2020 4,450 3 View

How to retrieve the lengths of all DNA-Sequences inside the NCBI GenBank?

I want to perform some statistics on the lengths of DNA-Sequences inside NCBI Genbank, for example, I want to draw a histogram of these lengths. So I am asking is there a way to retrieve the...

21 August 2020 8,531 3 View

Problems extracting metadata from NCBI in R?

I am trying to extract some information (metadata) from GenBank using the R package "rentrez" and the example I found here https://ajrominger.github.io/2018/05/21/gettingDNA.html. Specifically,...

12 August 2020 5,742 2 View

Why do the rentrez and NCBI web searches return different number of hits?

I am querying the GenBank and getting different numbers when compare searches in R (rentrez package) to the Nucleotide db at NCBI website. For example, entrez_search(db="nuccore", term =...

17 June 2020 7,127 3 View

Designing PCR primer for Sars-CoV mRNA ?

I need to design primers for PCR reaction for SARS-CoV mRNA strand...

01 June 2020 7,100 3 View

How do I batch download a set of GenBank files (in .gb format) into separate archives?

Hi! I need to create and maintain an updated database of all complete and annotated SARS-CoV-2 genomes that I could find at NBCI. I am pretty new to this, so I managed to get until the point...

13 March 2020 7,526 9 View

How to align multiple sequences (different genes) to a reference/query sequence (complete genome)?

I am working on FIV and have sequenced each gene individually and retrieved multiple complete genomes and individual genes from Genbank. I am trying to align all the different genes to the...

02 March 2020 1,419 1 View

How to make a GenBank or tab delimited format file from the output files of CPGAVAS? Which output file should be chosen for making GenBank ?

I have annotated chloroplast genome by using CPGAVAS web tool and got output files. further, i want to use OGDRAW to draw circular map but this requires GenBank format file. Please tell me which...

24 February 2020 3,605 3 View

Potential of miRNA and svRNA-N antagomirs as antivirals Missed in Chinese (ethnicity) This is engineered virus, Will stop after 35 days?

Potential of miRNA and svRNA-N antagomirs as antivirals Missed in Chinese (ethnicity) This is engineered virus, Will stop after 35 days. Wuhan seafood market pneumonia virus isolate Wuhan-Hu-1,...

31 December 2019 6,363 2 View