Hello, I need to use a program that only takes gbk as input.
I am working with viral sequences that are not under "genomes" but under "nucleotide" category in genbank.
I need to compare those with sequences of my own.
For my own sequences, I found a converter that converts fasta to gbk; but in case something goes wrong when inputting this file to the program, I would like to be able to download a nucleotide sequence from genbank as gbk to use as control.
Most tools the people use for that are for downloading genomes, so I don't know if they work for nucleotides.
What method do you recommend?
Thanks in advance.
Hi Sergio Fandiño González ,
may be this will help:
https://www.biostars.org/p/15248/#15249
"Search for the sequence that you want. The "display settings" link at the upper left hand corner will allow you to display the entry in various formats. Choose genbank. The upper right hand corner has a "send to" button that'll let you send to file and download the entry in genbank format."
Best wishes
Soenke
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