Is there any nice and recommended Gap Filling and gap extension software available?

05 May 2012 0 8K Report

I'm still newbie in NGS and my knowledge limited to few software. I'm trying to explorer to more software and method to gain my knowledge.

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Science method

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Alternative software for gene and functional annotation and prediction

I'm looking for alternative software for gene and functional prediction, metabolic pathway construction and etc., is anyone willing to share their experience in yeast gene and functional prediction?

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Any nice gene and functional annotation software recommend by user experience?

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What is the best idea to annotate a genome possess 70% gene slicing and 30% normal?

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I face a technical problem on newbler GUI.

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Other than velvet, abyss, newbler, CABOG and amos - can anyone recommend a good open source software?

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Anyone mine to share advance analysis of assembly ?

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How solve such problem when convert newbler ace or std ace format file to amos bank format ?

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Any visualization software that shows pair end read information?

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Anyone know how to handle CABOG, assembler software. Can you explain how to run it ?

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Runs of nucleotides in Sanger sequencing?

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How do you mesh a thin solid in Fluent?

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Errors in DNA sequences?

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I can detect my protein but the encoding DNA sequence has stop codons within. Should I ignore the stop codons?

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What is the significance of (isolated) high titers of IgG anti GD1a antibodies in an older patient with polyneuropathy?

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