K.s Sim

10 Questions 25 Answers 0 Followers

Questions related from K.s Sim

Alternative software for gene and functional annotation and prediction

I'm looking for alternative software for gene and functional prediction, metabolic pathway construction and etc., is anyone willing to share their experience in yeast gene and functional prediction?

07 July 2012 8,764 2 View

Anyone know how to handle CABOG, assembler software. Can you explain how to run it ?

I failed to make it on either Illumina PE, Hiseq2000 (stuck at mery) and Roche 454 FLX (stuck to create overlap)

05 May 2012 480 7 View

I face a technical problem on newbler GUI.

I cannot make newbler run GUI after installation and restart, can anyone can help me solve such an issue? I'm using CentOS 6.2 and Redhat 6. Both have the same problem >_

05 May 2012 3,777 0 View

Is there any nice and recommended Gap Filling and gap extension software available?

I'm still newbie in NGS and my knowledge limited to few software. I'm trying to explorer to more software and method to gain my knowledge.

05 May 2012 8,362 0 View

Anyone mine to share advance analysis of assembly ?

After quality filter, assembly, and validation. Is there is anything else or tiny thing that user could missing up. I'm wandering, the exact definition for advance assembly analysis

05 May 2012 8,713 2 View

Other than velvet, abyss, newbler, CABOG and amos - can anyone recommend a good open source software?

Looking for user experience feedback

05 May 2012 6,799 8 View

Any visualization software that shows pair end read information?

Do you know of any software that allows prediction and analyses of mis-assemble and QC of assembly result other than AMOS and CLC software?

05 May 2012 6,896 14 View

How solve such problem when convert newbler ace or std ace format file to amos bank format ?

During the conversion, the msg indicate the conversion fail, it's lock and lib not found. This situation also happend when I convert yeast velvet amos compatible to bank format.

05 May 2012 9,960 0 View

Any nice gene and functional annotation software recommend by user experience?

There is too many sources of annotation software. Some can publish the complete genome even just using fully automatic annotation software. Yet, there is mis functional annotation. Different...

05 May 2012 8,684 0 View

What is the best idea to annotate a genome possess 70% gene slicing and 30% normal?

This is my first time handling such genome data.

05 May 2012 5,659 0 View