Kindly tell me how to find promoter in a gene sequence?
I am trying to find the promoter region in ldmdr1 gene of Leishmania donovani. The gene sequence is in the following link
http://www.ncbi.nlm.nih.gov/nuccore/L01572.1
I want to know where is the promoter of this gene? nucleotide no. ___ to ___ ?
:-)
Prashanth N Suravajhala
Dear Arushdeep
From NCBI GenBank view, click "Highlight features" in the extreme right of the sequence panel in question. You may as well click "gene" and go to the graphical view where you will be able to see the regions from "Tools."
However, the best thing would be is to use prediction servers such as the one hosted in DTU: http://www.cbs.dtu.dk/services/Promoter/
Best,
Prash
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