How can I compute haplotype number and haplotype diversity from some given sequences in R with the package-"pegas"?

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Caner Aktas

cran package haplotypes (http://cran.r-project.org/web/packages/haplotypes/index.html) also provides functions for that. Install the package. Save your sequence data in fasta format. Suppose it is in the working directory and called sample.fas. Paste the following codes:

require("haplotypes")

#read your fasta file

Anik Dutta

thank you