Anik Dutta

12 Questions 19 Answers 0 Followers

Questions related from Anik Dutta

What is point of transformation if the effects does not change?

Hello, A question related to transformation. I have done a linear mixed model using the formula "trait~Iso+Host+Iso:Host+Replication+Iso:Replication+Host:Replication". It is a greenhouse...

05 May 2019 3,689 8 View

How to do Haplotype-based GWAS?

Hi, I have a SNP dataset containing 717045 SNPs. I want to a GWAS using Haplotype blocks. But I do not know first how to create haplotype SNP dataset for GWAS and also the criteria for creating...

05 May 2019 5,830 4 View

How to draw a scatter plot point with two colors in R studio?

Hi, I have a data set containing hybrid yield in one column, the cross combination of two parents in one other column and another variable in the other column. I want to make a scatter plot...

02 February 2019 417 6 View

Which software to use for trimming sanger sequenced data, making contigs and mapping to reference gene?

Hi, I have an amplicon of 1.6kb and I have sequenced it using forward and reverse primer. Now, I have to trim both the sequences and assemble those into one contiguous sequence. My goal is to...

09 September 2018 1,250 5 View

How to keep track of latest publications in specific research areas?

Hi, I would like to know how can I set up alerts for latest publication specific to my research field? My research interests are in wheat genomics, GWAS, wheat genetics, Zymoseptoria tritici,...

07 July 2018 7,026 4 View

Can anyone give me a head start for doing GWAS?

I want to perform genome wide association mapping for plant disease resistance gene. Since, I am completely a beginner in this field, it would be really helpful if someone can give me some advice...

01 January 2018 2,067 5 View

How to preserve wheat blast fungus in glycerol for long term storage?

Hello, I want to preserve wheat blast fungus in glycerol for long term storage. However, I do not know the procedure for this particular fungus. What should be the concentration of glycerol? Do I...

08 August 2017 392 7 View

How to interpret non significant F-test for main effect (genotype), but significant pairwise comparison?

Hello, I am analyzing a data set based on the trait values under drought condition. The experiment was carried out on three separate drought environments. First I have done a single experiment...

06 June 2016 2,379 13 View

How to calculate grain yield according to plot size and dry weight?

Hello, in my experiment I have 3 locations in which two locations have the same plot size and the other location has a different plot size. Again in the two locations with same plot size the...

05 May 2016 6,567 4 View

How to deal with outliers?

Hello, I am doing data analysis with PLABSTAT, after the analysis I am getting information about the suspected outliers. So, how can I deal with it? Should I delete those values and regard the...

04 April 2016 1,084 7 View

How should I perform data analysis when there are different number of replications and traits measured across 2-3 locations?

I have the data of maize drought trials. There are 3 locations and 5 environmental conditions where the trails were done. Now, the problem is that the data are very unbalanced. There are different...

03 March 2016 4,055 6 View

How can I compute haplotype number and haplotype diversity from some given sequences in R with the package-"pegas"?

Suppose i have the following sequences and I want to calculate haplotype number and diversity using R-pegas. What code should I use? Sample 1 GATCGAACAG Sample 2 GAACGAACAT Sample 3 TATCGAACAG...

05 May 2015 9,112 2 View