I want to perform genome wide association mapping for plant disease resistance gene. Since, I am completely a beginner in this field, it would be really helpful if someone can give me some advice on how to approach, how to design the GWAS pipeline, valuable publications etc. The genotyping and phenotyping of my genotypes have been done. I have all the data.
Looking forward to your help.
This paper could be helpful
https://www.frontiersin.org/articles/10.3389/fpls.2016.01483/full
Here is a list of videos on how to perform GWAS from the Plant Breeding & Genomics YouTube Channel https://www.youtube.com/user/plantbreedgenomics/search?query=gwas.
Also, you may want to check out other online educational links from the National Association of Plant Breeders web page https://plantbreeding.org/content/online-resources-for-plant-breeding-education.
Best of luck!
My start up offers gwas service for research institutions. [email protected]
Here is very useful tool for GWAS and GS. That named GAPIT. There are so many researcher used this tool and you can find out many question and answers in www.zzlab.net/GAPIT, https://groups.google.com/forum/#!forum/gapit-forum and https://github.com/jiabowang/GAPIT3. Hope that will help you.
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