I'm working on a co-localization algorithm in CellProfiler based on Neiland 2014.

After filtering and making the image binary - I get two different images for Homer1 and SYT1 when identifying the primary objects. Both are thresholded the same. Any ideas why the output image for Homer1 would be so different? I'd like it to be more like the SYT1 identification.

See images for thresholding and output. (same settings for both SYT1 and Homer which is why I am confused the output detection image is so different)

Thank you!

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