Can docking be tried out with polysaccharides?

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John Tainer

We originally developed TURNIP as a docking program that would do rational searches with constraints which became Daughter of TURNIP or DOT - http://www.ks.uiuc.edu/Development/biosoftdb/biosoft.cgi?&category=7

I think DOT may do this for you - see http://www.sdsc.edu/CCMS/DOT/

Madhurima Kahali

Thanks John, I would try that out. Is it feasible to do a docking with complex structures, like polysaccharides?