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Questions related to Bioinformatics
By giving a sequence as an input, are there any available computational tools for finding the pseudogenes in a particular organism?
06 June 2019 6,686 4 View
answer .... please ??
06 June 2019 2,247 1 View
If I have a list of amino acid sequence motifs in a java regular expression format, what is the best way to identify all occurrences of these motifs in all ORFs. (I have the ORFs in a .fasta...
06 June 2019 8,230 3 View
I am doing a BLAST search using the WGS database restricted to Campylobacteriaceae but one of the times after 3h I still didn't have the results. Is it normal to take so long? Thanks
04 June 2019 1,892 2 View
hello everyone , i just like to ask the bioinformatic professionals here about the best free validation software to validate my 3D structures... i'm still new in the bioinformatic field and i'd...
05 May 2019 3,196 6 View
I would like to assess few enzyme proteins among the organism to understand the difference in their actions. The structure was modelled using homology modeling and same enzyme having different...
05 May 2019 6,491 8 View
I would like to perform positive selection analysis among mammals. I am mostly interested in positive selection in humans and I have started off with around 100 mammals species and looking for a...
05 May 2019 1,300 2 View
Hi, I have a SNP dataset containing 717045 SNPs. I want to a GWAS using Haplotype blocks. But I do not know first how to create haplotype SNP dataset for GWAS and also the criteria for creating...
05 May 2019 5,874 4 View
Hi I lysed rat hippocampi neurons and ran a western blot for B-III Tubulin protein and I saw protein bands. However, I reprobed the PVDF membrane (after three washes with TBST) with my...
18 April 2019 9,677 10 View
I have an input file containing precursor mass and peak list (m/z and Intensity) of tandem mass spectrum. The file contains multiple spectrum data. I need to identify peptide using sequest and...
04 April 2019 6,562 5 View
I'm looking for a bioinformatic server/software/tools previously described to measure the nucleosome-formation score of a given set of sequences. (i.e. workflow: input sequence -> nucleosome...
04 April 2019 8,910 1 View
What is Bioinformatics in Pathology?
04 April 2019 7,906 1 View
hi everybody, I want to use SHAPEIT2 in the my thesis for phasing. I have only a little information about bioinformatics and SHAPEIT2. I want to use freely SHAPEIT2. Best regards
04 April 2019 6,075 3 View
I'm looking for latest research articles on transcriptomics and proteomics study on transgenic sugarcane under drought stress
04 April 2019 6,634 5 View
Hello everyone, I am doing a phylogeographic/population genetic study on an island species with limited dispersal capabilities. I'm having difficulty determining between what is biologically...
04 April 2019 9,315 3 View
Is anybody aware of the following NGS data analysis workshop in Germany ? I would like to know if anyone has a feedback if it is good or not ? Would there be any other better workshops to...
04 April 2019 3,156 4 View
What are some interesting research areas in bioinformatics where we can utilise the power of machine learning? And areas which are much easier to cope up with for computer science grads.
04 April 2019 739 6 View
Do anyone can share me somebody online resources for self-learnings of R statistic show package. I have no bioinformatic background but have to work with a dissertation that needs R statistics.
04 April 2019 3,666 3 View
we are planning to buy the gene studio S5 for starting the BIPT testing. we asked and inquired many times for knowing the cost per test for Nipt on above said instrument. i wish to know that what...
04 April 2019 688 0 View
I have modeled a protein, performed MD simulation and Docking studies. What are the other/additional computational study that can be performed further in order to target a high impact journal.
04 April 2019 1,945 7 View
In the data sheet from PD or Maxquant, there are many phosphopeptides which are derived from missed cleavage. That means one phosphosite is distributed to different peptides due to the missed...
04 April 2019 1,721 1 View
Using Genevestigator, we identified a set of genes co-expressing with my gene of interest (transcription factor). Now, I am using PlantPan database to check whether the co-expressed genes'...
15 March 2019 4,681 4 View
I have already downloaded a real data for cancer but each file is 12.8GB so i can not upload the data on galaxy tool, i am also a begineer in bioinformatics i can not work with shell. any one can...
03 March 2019 545 3 View
Hi, could someone let me know about a webportal/ software where I can hunt the sequences for the Type II polyketides and import all the available sequences ? I want to screen all of those...
03 March 2019 1,744 1 View