I am doing a BLAST search using the WGS database restricted to Campylobacteriaceae but one of the times after 3h I still didn't have the results. Is it normal to take so long? Thanks
Its not just about what database (subtype) you are using, it mainly depends on what is there in your query file.
If query file is very long (like WGS) then it will missmatch with different undesirable sequences in BLAST tool of NCBI.
I'm running an EMSA to show the DNA binding activity of recombinant proteins versus the Wild type. Previous assays run by my research group using a different test system show the protein-DNA...
24 February 2021 8,325 1 View
I've been working with qPCR for some months now. I amplify 2 genes (PSEN2 and HN1), and the protocols are optimized for both and have been working fine. The other day I amplified HN1 for some...
21 February 2021 3,437 3 View
If ethanol has analgesic properties, why isn't it used for clinical purposes?
18 February 2021 8,227 4 View
Hi everyone! I am about to extract RNA for RNA sequencing assays and my Invitrogen kit/protocol...
14 February 2021 1,755 3 View
I am working on some physiological traits of plant to which its expensive to raise the sample size beyond n=3. so kindly suggest some test which is applicable to test such group(2)
04 February 2021 461 11 View
Surely they will want to avoid contact with air/moisture, so what is the procedure for this?
23 January 2021 428 2 View
06 January 2021 1,718 2 View
We have a projet about TAVI
22 December 2020 7,729 1 View
https://data.mendeley.com/datasets/btchxktzyw/2/files/9cb11466-b3a6-4f20-92e6-02f5d9b81d1d
21 December 2020 5,817 1 View
16 December 2020 9,657 5 View
I treid to use Entrez Batch, but it redirects me to NCBI site. Is there any script of Linux or Python through which I can download Fasta sequence of list of gene ID ?
21 February 2021 7,783 12 View
20 February 2021 5,984 3 View
I'm using blast furnace slag for stabilizing subgrade soil.
17 February 2021 7,333 3 View
Hello, I have designed a specific primer for my Gene, when I blast this primer, it just finds the mRNA of the gene, but in nr blast, I have found some CDSs that are not relevant to my Gene. Do...
05 February 2021 5,842 3 View
Hi, I have modeled concrete plate with reinforcement supported on 2 concrete block. between concrete block and the plate I have added regular contact. I have created 2 steps: 1) only gravity load...
30 January 2021 2,772 1 View
I have a need to search for single-copy conservative orthologs within several plant genomes and used BUSCO tool for that. However, I found that the results produced by different versions on the...
29 January 2021 7,764 6 View
My environmental sample was analyzed for fungi by both DGGE (18S) and NGS (ITS2), resulted in some different names (in the top 5 of strong bands in DGGE, or most abundant sequences in NGS) between...
21 January 2021 5,310 3 View
Hello, I am testing different species-specific primer sets. I have two targets (two species, but same gene target). I am trying to select the best primers -- one that will amplify the target...
18 January 2021 1,981 6 View
Dear Researchers, I have Transcriptome/Genome data and want to list all the member of a KCS/CER gene family whose Domain AP2/ERF, FAE1_CUT1, according to the Arabidopsis database, so is there...
15 January 2021 2,293 3 View
I want the info (gene name, metabolic pathway, and organism of origin) of some key identified metatranscriptome genes obtained from MG Rast (I have the sequences). The KEGG ftp site seems to...
12 January 2021 9,985 1 View