3D culture generally induces some type of cell differentiation (depending on the conditions the cells are in). Mostly only stem cells or cancer stem like cells can differentiated in 3D. Thus it is a characteristic of stem cell if given the proper signals will differentiate. There are some differences between normal and cancer stem cell such a alteration in karyotype for cancer cells. Some therapies for cancer are to try to induce differentiation of cell (e.g. cells that do not proliferate is a good outcome in cancer therapy). Hopefully this helps answer at least part of your question. If not write back.
Thanks for the explanation. I wonder why 3D culture condition is being employed to enrich cancer stem cells while this condition promotes the differentiation of embryonic stem cells even though we used culture media support the stem cell self-renewal ? Is this could be due to integrin/cytoskeloton modification which differ in these 2 cell types? or some kind of cell-cell communications?