Relative positions (channel numbers) of the CEN peaks can therefore be used to determine the relative DNA index of unknown samples. CEN can be used if a ploidy check is deemed necessary while at the same time cell cycle data is required.
There is considerable debate as to whether CEN controls are the most appropriate internal standards. A human blood preparation may be more relevant, providing that the cell lines in question are not true diploid in nature (in which case the two peaks will overlap owing to their identical relative DNA contents