Its clearlly mention that for less than 200 aa you can use quark but for bigger proteins submit to I-TASSER Server .Protein Model Portal is best because same time you can get result from different server like ModWeb, ITASSER, PHYRE2 at a time.
yes I know,,but a have use that software already and the result not good enough, but i read one paper that mention if we want use quark with large protein wit need some trick, but the author not mention what trick that he/she talking about...thank you
Tell me y u particular about quark? If ur molecule showing homolgy with other thn u can model using modeller
Maybe the trick is merging structure. You build your partial model only and merge it. For detailed explanation, don't hesitate to contact the author in the paper( as you mention it)
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