How you can define non coding RNA, gene and pseudogene??

now I have study about non coding RNA, but I little bit confuse because NCBI said that it sequence is non coding RNA, but another database said it predicted gene...

09 October 2015 1,349 2 View

Can anyone help, why my GAPDH band seems not uniform?

I make cDNA from uniform RNA concentration 1 mikrogram/mikroliter, did it have corelation with PCR condition?? or because my RNA have low quality??

09 October 2015 9,671 3 View

Does anybody know a web server that is running Molecular Dynamics (MD)?

I want to do a simulation with Molecular Dynamics but lack the facilities.

11 December 2013 2,850 15 View

Protein modelling - can anyone help?

I have to model IRS-I protein and I use quark for my modelling, but because the protein is too large I only use protein partially around 37 AA based from article that this amount has effect in...

11 December 2013 6,922 5 View

Protein modelling - can anyone help?

I need to model the IRS-I protein, but the homology modelling and I tasser result is not good enough, I have planned to use quark, but protein length is too large for quark.

10 November 2013 9,152 9 View

What are some tricks to modelling large proteins using quark?

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10 November 2013 1,684 6 View

I am running docking with AutoDock Vina, and I am still confused about how to choose a reliable range for binding affinity?

I have found the best results with a binding affinity of 6,7 kj/mol.

09 October 2013 3,923 1 View

Error using AutoDock 4?

I ran AutoDock 4 via PyRx. I got this error: "AttributeError: Docking instance has no attribute 'ligMol'." How do I solve it?

09 October 2013 2,040 11 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View