I am using MDweb to analyse MD. While checking protein, I have been given some warning about polar acceptor clashes, apolar clashes and ionic negative clashes. Any suggestions?
which method is used for adding proton before the MD production, are HIS verified before... and as previously, more information will be great
now I have study about non coding RNA, but I little bit confuse because NCBI said that it sequence is non coding RNA, but another database said it predicted gene...
09 October 2015 1,395 2 View
I make cDNA from uniform RNA concentration 1 mikrogram/mikroliter, did it have corelation with PCR condition?? or because my RNA have low quality??
09 October 2015 9,746 3 View
I want to do a simulation with Molecular Dynamics but lack the facilities.
11 December 2013 2,905 15 View
I have to model IRS-I protein and I use quark for my modelling, but because the protein is too large I only use protein partially around 37 AA based from article that this amount has effect in...
11 December 2013 6,979 5 View
I need to model the IRS-I protein, but the homology modelling and I tasser result is not good enough, I have planned to use quark, but protein length is too large for quark.
10 November 2013 9,203 9 View
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10 November 2013 1,725 6 View
I have found the best results with a binding affinity of 6,7 kj/mol.
09 October 2013 3,980 1 View
I ran AutoDock 4 via PyRx. I got this error: "AttributeError: Docking instance has no attribute 'ligMol'." How do I solve it?
09 October 2013 3,088 11 View
"PUBLISHING IN A SCOPUS JOURNAL" Researchers are now at a cross road. The critical need to publish in a Scopus or ISI, etc journal is ever vital. Journal Publication fees must be submitted....
10 August 2024 8,621 1 View
Hello everyone, I am currently developing a thesis proposal and would appreciate your input on its viability and how to effectively carry it out. My proposed topic is: "Does the perceived threat...
10 August 2024 8,992 0 View
Who will bear moral responsibility for the deaths of thousands of people in the event of an earthquake? Weeks and months remain before the onset of strong earthquakes that bring death to...
08 August 2024 6,134 12 View
Hello experts, Does anyone know any free software about retention index prediction ?
08 August 2024 7,403 2 View
There are a huge number of methods for studying objects in space, according to the senses (and not only). Mechanical, thermal, optical, acoustic, electrical, magnetic, based on particle beams,...
06 August 2024 7,102 0 View
After immunohistochemistry of previously fixed in PFA and EtOH and then frozen 20 μm sections of zebrafish brain, DAPI staining is very weak (right) compared to the same sections stained without...
05 August 2024 9,637 2 View
I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...
05 August 2024 6,787 4 View
Brain and body mass together are positively correlated with lifespan (Hofman 1993). The duration of neural development is one of the best predictors of brain size, and conception is the best...
05 August 2024 6,247 3 View
In the case of a wound l recurrence after radical breast cancer and sentinel lymph node biopsy. Are the sentinel lymph node procedure recommended? If no axillary lymph node dissection was not...
05 August 2024 8,056 1 View
Regarding a model for simulating battery charge and discharge, what do you consider to be high fidelity? What is the acceptable percentage of error (regardless of the metric)? Could you suggest...
03 August 2024 5,358 0 View