Ratih kusuma Wardani

9 Questions 9 Answers 0 Followers

Questions related from Ratih kusuma Wardani

How you can define non coding RNA, gene and pseudogene??

now I have study about non coding RNA, but I little bit confuse because NCBI said that it sequence is non coding RNA, but another database said it predicted gene...

10 October 2015 1,370 2 View

Can anyone help, why my GAPDH band seems not uniform?

I make cDNA from uniform RNA concentration 1 mikrogram/mikroliter, did it have corelation with PCR condition?? or because my RNA have low quality??

10 October 2015 9,717 3 View

Does anybody know a web server that is running Molecular Dynamics (MD)?

I want to do a simulation with Molecular Dynamics but lack the facilities.

12 December 2013 2,884 15 View

Any advice on MDweb warning while checking protein?

I am using MDweb to analyse MD. While checking protein, I have been given some warning about polar acceptor clashes, apolar clashes and ionic negative clashes. Any suggestions?

12 December 2013 2,441 1 View

Protein modelling - can anyone help?

I have to model IRS-I protein and I use quark for my modelling, but because the protein is too large I only use protein partially around 37 AA based from article that this amount has effect in...

12 December 2013 6,960 5 View

What are some tricks to modelling large proteins using quark?

11 November 2013 1,706 6 View

Protein modelling - can anyone help?

I need to model the IRS-I protein, but the homology modelling and I tasser result is not good enough, I have planned to use quark, but protein length is too large for quark.

11 November 2013 9,180 9 View

I am running docking with AutoDock Vina, and I am still confused about how to choose a reliable range for binding affinity?

I have found the best results with a binding affinity of 6,7 kj/mol.

10 October 2013 3,954 1 View

Error using AutoDock 4?

I ran AutoDock 4 via PyRx. I got this error: "AttributeError: Docking instance has no attribute 'ligMol'." How do I solve it?

10 October 2013 2,865 11 View