Short linear protein sequence motif?

HJ Ryu @Hj-Ryu

23 April 2016 1 287 Report

Hi all,

I want to know various short linear protein sequence motif. For example, RGD and DFG motif.

Where can I get these information?

Daniel J Rigden

If you want to know of examples of such motifs check out the ELM database

http://elm.eu.org/

If you simply wish to search for a motif in a sequence of interest then you can use ps_scan

ftp://ftp.expasy.org/databases/prosite/ps_scan/

Badges
Science topic

More HJ Ryu's questions See All

Abaqus不收敛，警告里面出现下列问题，需要更改哪个地方？?

The system matrix has 172 negative eigenvalues. Displacement increment for contact is too big. Displacement increment for contact is too big. The strain increment has exceeded fifty times the...

05 July 2024 3,839 2 View

Troubles about using high pressure homogenizer (Emulsiflex B15)?

I have some trouble while using the Emulsiflex B15. Since last week, if i turn the air control knob to fill the sample inside the homogenizer, the sample does not enter well. And even if it...

04 March 2024 7,574 1 View

How can i deoxygenate oxyhemoglobin solution using nitrogen gas?

I want to deoxygenate oxyhemoglobin with nitrogen bubbling, but i can't observe the characteristic peak of deoxyHb in UV-Vis spectrum. Also, the concentration of my hemoglobin sample was little...

01 January 2024 5,512 0 View

How to plot contour of model at each dytime in flac2d ?

I use the FLAC2D 7.0. and, tried some analysis of model. But, I can draw the contour plot at dytime of end only. I wonder if i can plot the contour at each time using basic flac system not using...

25 October 2023 2,456 1 View

How can i degas the sepharose gel?

I'm going to experiment with sepharose CL-4B gel to isolate drugs that are not enclosed in liposomes. I need to degas enough before using the sepharose gel, and most of the references seem to be...

20 August 2023 5,827 1 View

What to Consider When Green Synthesizing Nanoparticles?

I am trying to synthesize metal (Fe, Cu, Zn) oxide nanoparticles by aqueous extraction of fruit peels (watermelon, orange, etc.) and coffee grounds. When synthesizing the nanoparticles, I found...

16 July 2023 6,919 4 View

Does the different darkness of Masson trichrome represent different level of fibrosis?

the file is masson trichrome of C57/b6 back skin part,I wondered if the less blue one reprensents ameliorated fibrosis? thanks for your attention

04 July 2023 5,206 0 View

What is the problem with HPLC Pump inaccurate flow rate?

Hello everyone, My question is about the flow exceeding the set value in the Knaver HPLC pump. By setting the flow pump to a specific value and opening the pressure relief valve, the flow output...

19 May 2023 8,424 7 View

What are the possible reasons of increasing peak intensity of certain plane while all other peak intensities decrease in XRD pattern?

I prepared thin PDMS film embedded with CsPbBr3 Perovskite quantum dot and doped Ag+ ions to PQDs inside PDMS. The XRD results showed that the peak intensity of (100) plane increased while...

13 April 2023 3,692 4 View

Does spectrophotometer continue to function without UV lamp?

The spectrophotometer available in our laboratory is a Cecil CE 2501 model. Unfortunately, the UV lamp of the device is about to run out, and we are currently unable to replace the UV lamp...

04 February 2023 8,865 3 View

How to learn more about SPSS and its Application?

I would like to learn more about SPSS and Its application especially in regards to data analysis. Please suggest me how I can learn more about it. Thank you so much.

11 August 2024 9,101 4 View

Can I base on reverse DNA sequences to perform alignment, convert to amino acids and GenBank submission?

I have reverse sequences (AB1 format), can I base on reverse DNA sequences to perform nucleotide alignment, convert nucleotides to amino acids and deposit the sequence in GenBank database?

11 August 2024 5,138 1 View

Baseline drift in HPLC? What causes this?

Hello, Why do i see this baseline drift when i compare my blank (black) to the sample (blue)? Any suggestions as to why this happened? Thank you!

11 August 2024 3,770 4 View

Text-Communication from the M1 Hand Area using BCI—and then there is Elon Musk?

Willett, Shenoy et al. (2021) have developed a brain computer interface (BCI) that used neural signal collected from the hand area of the motor cortex (area M1) of a paralyzed patient. The...

10 August 2024 7,180 0 View

Has anyone applied Python in the field of textile engineering for data analysis, automation, or smart textiles?

I'm currently exploring the application of Python in textile engineering, specifically in areas like data analysis, process automation, and the development of smart textiles. I'm interested in...

10 August 2024 7,429 2 View

How can I use the cif data obtained from rietveld refinement extracted via gsas2, for microstructural analysis using ETEX software?

09 August 2024 7,718 0 View

How to confirm the site-directed mutagenesis result without performing NGS?

I'm cloning a fragment of 3200 nts into plasmid. The cloning was successful, however, 02 amino acids were mutated. Now I want to fix these 02 aa by site-directed mutagenesis technique using...

08 August 2024 4,645 2 View

How are iso-frequency contours plotted?

Let's say we have a standard, regular hexagonal honeycomb with a 3-arm primitive unit cell (something like the figure attached; the figure is only representative and not drawn to scale). The...

07 August 2024 1,937 1 View

How to prepare the nanoparticle treated fungal sample for Environmental SEM analysis?

A fungal strain was treated with nanoparticles. We want to do an environmental SEM analysis. So could anyone share your views on preparing the sample? Thank you.

07 August 2024 5,307 1 View

How to normalize and take the significance of the MTT OD values with 3 replicates for the same cell-line?

Hi, I have a question about normalizing the MTT OD values for doing the statistical analysis. So, if we have 3 different plates and we call them 3 different replicates, so, first we would...

07 August 2024 8,106 4 View