I want to draw the signaling pathways involved in carcinogenesis manually using softwares available free online. I know about protein lounge, but isn't available freely. I request software which is free.
Hi Lakshi,
You can use a few free tools to build your pathway.
One of the tools is called Reactome (http://www.reactome.org), this is one of my favorites. It's easy to use.
The other one is Wiki Pathways (http://wikipathways.org/index.php/WikiPathways)
Let me know if you have any questions!
Bests,
Burak
You can also use PathVisio.
http://www.pathvisio.org/downloads/
Dear Dr. Burak,
Can we any pathway for publication which is construted by using wikipathways?
I have seen some answers but I can suggest cytoscape for this purpose. Yet, I have not used it personally. However It might be useful.
http://www.cytoscape.org/what_is_cytoscape.html
Hello,Can we save the pathway diagram created using pathvisio in png format? I'm not able to find the option of saving the file in png format.Should I install any plug-in?
Also,say I want to color the nodes of the pathway map.Where can I locate the option?
Any help would be much appreciated
There's a great tool for this called BioRender (www.biorender.io)
Has a library of pre-made cells, proteins, membrane shapes, organs, lab equipment, etc. that you can drag-and-drop so you don't have to spend time drawing each element of the figure out yourself. Saves a lot of time for schematic figures... it's also free for educational use!
I use Microsoft publisher or word to draw. But you can use a more advanced ChemBiodraw Ultra. It has some inbuilt diagrams that make life easy but you can also draw de novo.
Corel draw is another option but requires some skill to be able to do what chembiodraw can do with little effort.
Best option is to use abode illustrator or corel draw but mind in graph is best option for drawing. but you can also use pathvisio or cell illustrator.
Dear Lakshmi,
I preferably use Corel Draw, which is a wonderful and easy to use platform for drawing all kinds of diagrams. Apart from CorelDraw, which is a paid software, you can use Inkscape, which is also a nice tool to design scientific diagrams. It is also free tool.
Hello
You can try a one of these tools.
http://www.cellillustrator.com/
http://www.celldesigner.org/
http://www.pathvisio.org/downloads/
http://www.reactome.org
http://wikipathways.org/index.php/WikiPathways
Good Luck
ScienceSlides 2018 ( https://www.scienceslides.com/ ) has hundreds of pre-made pathways that are easy to modify.
Hi Lakshi,
You shouldt try with biorender (https://app.biorender.com/)
It is easy yo use and you can draw if you do a free-account.
Visit https://smart.servier.com/ download the templates and use it along with Microsoft Powerpoint to draw good biological pathways.
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