I need 3d structures of different alleles of the same protein.
take the sequence of your protein and do a BLAST on uniprot database selecting a PDB data base .
If 3D structures for different variants are not available , you can build these structures very easily by homology modelling
Hi
Below is the link of 10 Free Software for protein 3D structure visualization.I think this may solve your problem.
http://www.bioinformatics-made-simp...0-free-software-for-protein-3d.html
10 Free Software for protein 3D structure visualization~ Bioinformatics Made Simple.com
10 Free Software for protein 3D structure visualization
Another program for 3D protein structure visualization is FFAS. This program may also generate pdb files
http://ffas.burnham.org/ffas-cgi/cgi/ffas.pl
You may also try some of the programs available here:
http://www.uwm.edu.pl/biochemia/index.php/pl/biopep/45-structure-prediction-and-visualisation
Program for comparison of two structures annotated as pdb files - CLICK
http://mspc.bii.a-star.edu.sg/minhn/intro.html
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