I haven't done it myself, but maybe NMR or the specific IR-valence band changed? You could also dialysis/ultrafiltrate your sample and check your sample just with UV/Vis or fluorescence for RhB peaks.
Try dialysis, if dye (small molecule) is permanently bond to the acrylic polymer (big molecule), it will not diffuse through the membrane pores. You should apply membrane of a proper cut size, depending on the molecular weight of Eudragit, 10 kDa should be OK.