I did an internship at Advanced Center for Treatment, Research and Education in Cancer (ACTREC) a while ago. They have a good flow cytometry facility. Details can be found here,
You can also inquire at National Institute of Virology Pune. They have both basic and advance cytometers. Also national centre for cell sciences, Pune has. good luck
Myself , Rao , Imperial Life sciences, and we are exclusive distributors , india for Amnis Imaging flowcytometers, , still if you would like to use Amnis Technologies. pls feel free to contact us, [email protected]