How can I compare two (or more) networks?

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Akanksha Gupta

you can do it very easily in cytoscape tool. there are many plugins which can perform this task.

Mohsen Ashrafi

Hi Akanksha Gupta,

How to do it correctly? Can you explain it more or send me manuscript of that?

Ankush Sharma

If you want to do compare the topological structure of the networks you can use Netnanalyzer or centiscape plugin of Cytoscape. Kindly find the link to the article showing the comparison.

Article The protein–protein interaction network of the human Sirtuin family