Hello,
Im looking for good free alternatives to QIAGEN's IPA, could you suggest some similar software?
I'd preferably use a standalone version, not an online-based tool, it would also be great if it would be available on macOS.
I like PathVisio and there is a Mac version. It has not been updated for a while, but it looks like they are working on a new version.
https://pathvisio.org/
hi all
pathvisio and cytoscape are really good tools to analyze data. in the other hand for friendly use, you can test DAVID or StringDB.
all the best for this new year
stay safe
fred
You may take a look at the Enrich package in r (open source) language. It runs online (using rstudio.cloud) or locally (win10/Linux/macOS)
cheers!
N
Thank you all for these answers, i will check all your suggestions.
Best
Free tools are not free. You may not pay in dollars but you will pay either in time to deploy and use, or lower quality of results. See for instance this Nature Methods article that looked at about 4,000 papers published in one year and found that of 67% of them used outdated free software that captured only 26% of biological processes and pathways known at that time: PMID: 27575621.
I would recommend iPathwayGuide (www.advaitabio.com). It is not free but it is significantly less costly than IPA.
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