I am doing transcription factors prediction for a miRNA.

The pri-miRNA is located in the positive strand, but JASPAR showed the result with many TFs binding in the negative. I am wondering if those TFs could be candidates for ChiP assay?

Is it possible if the TF binding site is in the downstream of transcript start site? Could you please give me an article about that?

Looking forward to your answer. Thanks a lot.

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