Do you know a Bioinformatics database or tool for SNPs in linkage disequlibrium?

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Do you know journals for free publication cost?

Dear all, i am looking for a list or suggestions for biomdical jurnals that can publish for free or waiver publication cost for authors from low income countries. I know about the BMCs but I need...

04 May 2019 8,833 4 View

How to use NEBcutter?

Hello everyone, I would like to use RFLP to detect specific SNP. I would like to selelect specific enzyme that cuts in certain nucleaotide using NEBcutter but I do not know if I did well using...

10 November 2018 5,629 0 View

What are the parameter of the bioinformatic tools?

Dear all, Now a days there are too many bioinformatic tools and sftwares freely available on the net like SIFT and Polyphen. These tools are able to predict the effect of specific varaiant on...

09 October 2018 591 2 View

Is there anyone familiar with CYP21A2 gene?

Hello all, I am using panel sequancing and I found a homozygous mutstion in cyp21A2 gene. I did sanger but couldnt find this mutation. I think there is a possibility that I sequanced pseudogene....

09 October 2018 2,831 0 View

Is there anyone who has knowldege in insl3?

Dear all, I would like to know if there is anyone who know a research group or a paper on mouse modeling studying insl3?

09 October 2018 8,725 0 View

What are the bioinfromatic tools that can predict deletions and insertions?

Hello everyone, I am working on some SNPs and mutations and I would like to have good prediction tools. It is easy to find bioinformatic tools for SNPs prediction but I couldn't find prediction...

06 July 2018 3,252 0 View

Can anyone recommend a good booksand programs for biostatistics?

Hello everyone, can you please recommend good books for biostatistics for both beginner level and a little advanced level? I also would like to have or advice for a good satistical progams that...

03 April 2018 222 7 View

Why project HOPE couldnt find the amino acid change?

Hello everyone, we extracted SNPs from dbSNP then we retrived the protien sequance from Uniprot. Then we submitted the amino acids changes corresponding to the protien change to proiect HOPE...

02 March 2018 1,419 1 View

Can any one help me with protien stability prediction tool?

Hello every one, I am looking for a bioinformatic tool for protien stability prediction. Can you please suggest for me? or provide me with links? Thank you

02 March 2018 5,562 5 View

Why Alleles in the same SNP changes?

I would like to know the wild type and mutant type allele of rs1344706 but some time I find it A/C and some times I find it G/T. Is this has anything to do with NCBI assay ID? Will a SNP has the...

02 March 2018 1,675 5 View

How to repeat an operation on an atom selection for multiple times in PyMol?

Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...

02 March 2021 4,569 4 View

How to calculate average trend in maximum annual NDVI from MODIS?

I am wanting to calculate the average trend in maximum annual NDVI in Iceland from 2010-2020 using MODIS MYD13Q1 V6. How would I do this? I have currently inserted the NDVI bands from the MODIS...

02 March 2021 752 2 View

Shall I skip the measurement model in SmartPLS?

Hello everyone, I had run a mediation model in SmartPLS using questionnaires that were already validated among my statistical population. A professor who edited my paper -though she is not...

01 March 2021 3,052 3 View

Why does two different bioinformatics tools for the same proteins show different subcellular localizations?

During a computational analysis, I found that for a protein of a plant, two different subcellular localizations are seen using CELLO and WoLF PSORT. For example, in CELLO, it identified the...

01 March 2021 6,729 2 View

What is the most suitable server for predicting protein structures in bacteria?

I have used the i-Tasser several times, however it has been unavailable for several days. I tried the swiss-model, but the output was not very pleasant due to the model used. Is there any other...

28 February 2021 4,521 3 View

How to eliminate Steady state error from Reinforcement learning genetic algorithm code?

The following code (see 1st 2 images attached) is used to produce PID controller values that are designed to control the system (G). The code finds the PID controller values (noted as k) by using...

28 February 2021 6,560 14 View

Why am I not able to use all VEP programs for the in silico analysis of avpr1b SNP's?

Good day researchers I am busy analysing the predicted effects of certain SNP's in AVPR1b. When using the VEP prediction programs (SIFT, Polyphen, FATHMM, LRT, Provean, Mutation Assessor, and...

28 February 2021 5,197 1 View

What is the difference between genotype and haplotype data in the ped format?

Hi everybody In the ped format for genotype, alleles of any SNP are represented by two columns (one for each allele, separated by a space). Is a column sufficient for the haplotype to...

27 February 2021 1,965 1 View

I have need of XRD graph analysis software for phase identification. Can you please provide links for software tools which can be downloaded?

i am trying to download x'pert high score software, but can't download it. please do suggest software for phase analysis

24 February 2021 5,687 4 View

How to constrain genetic algorithm input u?

My real system (buck converter) can only take an input of 0 to 1 (duty ratio) and I need to constrain the system so the controller action keeps within this bounds. How can I do this? The code for...

22 February 2021 2,125 3 View

Robert Mukiibi

for what species??? LD between most SNPs might be stable within a subpopulation of a species but it is hardly constant between or across sub-populations of a species so i would hardly expect a database for such SNPs..

Mona Ellaithi

I guess there would be some databases on human.

Sugunakala Ssk

NCBI database consists of tools and databases for SNP analysis. All kinds of information available in that resource.