I am developing a questionnaire for social science. The preliminary questionnaire has 35 items with 6 domains. However, one of the domains was optional ( 5 items), where only those who had been involved in an accident before needed to answer that questions. Unfortunately, my answer option for answering the questionnaire did not include not applicable.

When I run the EFA, parallel analysis suggests 5 factors. But this optional domain loads closely with another item with different instructions/ other domains.

So my question is, can I remove this one domain ( 5 items) from the EFA analysis and run the remaining 30 items for EFA. Then, re-include this optional domain when I run for CFA. Can I use expert judgment /based on the importance of that optional domain to the questionnaire to retain it as it is?

( I try to rerun the 35 items and 6 domain/factor ( including the optional domain) using CFA, and the result indicated good convergent and discriminant validity)

I wonder if this method is permissible or how I should go about it? Thanks

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