Why is AutoDock vina setting the grid center to (0,0,0), and how can I correctly align the grid box with the ligand’s binding site?
In AutoDock, when I drag and drop the PDB file, the binding pocket appears correctly (which I also, confirm by PyMOL and Discovery Studio), but the grid box center (X, Y, Z) is set to (0.0, 0.0,...
21 March 2025
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