I'd like to have statistics for my genes expression data, which is the 2-deltaCT values from qRT-PCR data. I have 20 genes, their expressions were surveyed by time points. I used two-way ANOVA statistical method, but some articles used one-way ANOVa, some used two-way ANOVA, other used t-test, ect.

Was the method I used right or wrong?

If it's wrong, what methods are the best?

If it's right, I'm very confused in my results I got. In particular, when I changed gene (in group) to analysis I also get change of statistical result (p value) on remain genes. For example, I got the p-value of A, B, C, D.... gene when I used 2-way ANOVA; but when I removed one of them from analysis data, I got change of p-value of others gene.

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