I have collected all known splice variants of few genes and need to produce a visual splice graph that tells which exons are missing or trimmed or extended in which variants. Which software/tool /package is available to accomplish this task?
Please poornima, try to use the expasy tool or follow this link www.bioinformaticsonline.org it will answer for question.
Dear Poornima,
You can try this web site : www.genosplice.com
Best regards
Thanks for taking time for answering . But none of the above answers my question.
Hello Poornima! I had to produce a simmilar graph and used a program I found on the web. However, best graphic results are obtained if you get the alignment of your gene products on ensembl.
Here's an example of how it looks like. You can hide the unwanted tracks in the graph.
http://www.ensembl.org/Drosophila_melanogaster/Gene/Splice?db=core;g=FBgn0003380;r=X:17818340-17957278
http://www.clcbio.com/products/clc-sequence-viewer/
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