What software can be used for docking of proteins with DNA? I've heard that AutoDock can be used for docking proteins and RNA but does it work with DNA as well? And are there any other softwares?
Hi dear,
You can just proceed with Autodock 4.2 software. It works well with DNA.
(http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/)
Hi
The HDOCK server (http://hdock.phys.hust.edu.cn/) supports protein–RNA/DNA docking and is user friendly.
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